动物粪便对紫色土中人类致病菌传播的影响
Effects of Animal Feces on Transmission of Human Pathogenic Bacteria in Purple Soil
-
摘要: 畜禽粪肥进入土壤会促进抗生素耐药性的传播,在传播过程中一旦人类致病菌获得抗生素耐药性,将对人类健康造成巨大威胁。本研究采用高通量测序技术,探究施加猪粪或鸡粪肥后紫色土中致病菌水平及其与抗生素抗性基因的共生关系。结果表明,与未施肥土壤相比,施加粪肥可明显改变土壤细菌群落结构。施加猪粪土壤中的致病菌丰度显著高于施加鸡粪土壤与未施肥土壤。施加粪肥后土壤中致病菌丰度随培养时间增加而减少,可能与土壤生态系统本身的自我净化功能有关。羊布鲁氏杆菌、毕氏梭菌、产气荚膜梭菌与多种抗生素抗性基因显著相关。致病菌相对丰度变化与细菌群落结构有显著相关关系(P<0.01)。细菌群落与土壤理化性质对致病菌相对丰度变化的解释率可达70.6%,可知二者是造成致病菌相对丰度变化的主要因素。综上所述,施加畜禽粪便可增加土壤中致病菌丰度与多样性,同时致病菌与多种抗生素抗性基因存在共生关系。
-
关键词:
- 紫色土 /
- 粪肥 /
- 人类致病菌(HPB) /
- 抗生素抗性基因(ARGs) /
- 高通量测序
Abstract: The application of animal manure may significantly promote the spread of antibiotic resistance in farmland soil. High risk for public health arises once human pathogenic bacteria in soil acquire antibiotic resistance. In this study, effects of pig and chicken manure application on the level of pathogenic bacteria and their co-occurrence pattern with antibiotic resistance genes in purple soil were investigated by pot experiment using high-throughput sequencing technology. By comparing with the unfertilized soil, manure application was found to significantly alter the structure of soil bacterial community. Relative abundance of pathogenic bacteria in the pig manure applied soil was significantly higher than those in the chicken manure applied soil and unfertilized soil. Following application, the abundance of soil pathogenic bacteria decreased with the time during the incubation, which can be recognized as self-purification ability of soil ecosystem. Brucella melitensis, Clostridium beijerinckii and Clostridium perfringens were significantly correlated with antibiotic resistance genes. A very significant correlation was observed between pathogenic bacteria abundance and bacterial community structure (P<0.01). Bacterial community and soil properties together could account for 70.6% of the changes in relative abundance of pathogenic bacteria, indicating that these two factors were the most influential ones. Overall, the application of livestock manure may cause elevated abundance and diversity of soil pathogenic bacteria, which can co-occur with diverse antibiotic resistance genes. -
仇焕广, 廖绍攀, 井月, 等. 我国畜禽粪便污染的区域差异与发展趋势分析[J]. 环境科学, 2013, 34(7): 2766-2774 Qiu H G, Liao S P, Jing Y, et al. Regional differences and development tendency of livestock manure pollution in China[J]. Environmental Science, 2013, 34(7): 2766-2774(in Chinese)
刘春, 刘晨阳, 王济民, 等. 我国畜禽粪便资源化利用现状与对策建议[J]. 中国农业资源与区划, 2021, 42(2): 35-43 Liu C, Liu C Y, Wang J M, et al. Thecurrent situation of resource utilization of livestock and poultry manure in China and the countermeasures and suggestions[J]. Chinese Journal of Agricultural Resources and Regional Planning, 2021, 42(2): 35-43(in Chinese)
张克强, 杜连柱, 杜会英, 等. 国内外畜禽养殖粪肥还田利用研究进展[J]. 农业环境科学学报, 2021, 40(11): 2472-2481 , 2591 Zhang K Q, Du L Z, Du H Y, et al. Application of livestock and poultry waste to agricultural land: A review[J]. Journal of Agro-Environment Science, 2021, 40(11): 2472-2481, 2591(in Chinese)
Liu S B, Wang J Y, Pu S Y, et al. Impact of manure on soil biochemical properties: A global synthesis[J]. The Science of the Total Environment, 2020, 745: 141003 Goberna M, Podmirseg S M, Waldhuber S, et al. Pathogenic bacteria and mineral N in soils following the land spreading of biogas digestates and fresh manure[J]. Applied Soil Ecology, 2011, 49: 18-25 Heinonen-Tanski H, Mohaibes M, Karinen P, et al. Methods to reduce pathogen microorganisms in manure[J]. Livestock Science, 2006, 102(3): 248-255 van Bruggen A H C, Goss E M, Havelaar A, et al. One Health—Cycling of diverse microbial communities as a connecting force for soil, plant, animal, human and ecosystem health[J]. Science of the Total Environment, 2019, 664: 927-937 Fu S Z, Wang Q Y, Wang R, et al. Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment[J]. Science of the Total Environment, 2022, 820: 153286 Udikovic-Kolic N, Wichmann F, Broderick N A, et al. Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization[J]. Proceedings of the National Academy of Sciences of the United States of America, 2014, 111(42): 15202-15207 Forsberg K J, Reyes A, Wang B, et al. The shared antibiotic resistome of soil bacteria and human pathogens[J]. Science, 2012, 337(6098): 1107-1111 Tamaki H, Wright C L, Li X Z, et al. Analysis of 16S rRNA amplicon sequencing options on the Roche/454 next-generation titanium sequencing platform[J]. PLoS One, 2011, 6(9): e25263 Edgar R C. UPARSE: Highly accurate OTU sequences from microbial amplicon reads[J]. Nature Methods, 2013, 10(10): 996-998 Wang Q, Garrity G M, Tiedje J M, et al. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy[J]. Applied and Environmental Microbiology, 2007, 73(16): 5261-5267 Li J Y, Chen Q L, Li H L, et al. Impacts of different sources of animal manures on dissemination of human pathogenic bacteria in agricultural soils[J]. Environmental Pollution, 2020, 266(Pt 2): 115399 McCarthy G, Lawlor P G, Gutierrez M, et al. Assessing the biosafety risks of pig manure for use as a feedstock for composting[J]. The Science of the Total Environment, 2013, 463-464: 712-719 Zhu L, Lian Y L, Lin D, et al. Insights into microbial contamination in multi-type manure-amended soils: The profile of human bacterial pathogens, virulence factor genes and antibiotic resistance genes[J]. Journal of Hazardous Materials, 2022, 437: 129356 Cheng J H, Tang X Y, Liu C. Bacterial communities regulate temporal variations of the antibiotic resistome in soil following manure amendment[J]. Environmental Science and Pollution Research, 2021, 28(23): 29241-29252 Fang H, Han L X, Zhang H P, et al. Dissemination of antibiotic resistance genes and human pathogenic bacteria from a pig feedlot to the surrounding stream and agricultural soils[J]. Journal of Hazardous Materials, 2018, 357: 53-62 Ozlu E, Kumar S. Response of soil organic carbon, pH, electrical conductivity, and water stable aggregates to long-term annual manure and inorganic fertilizer[J]. Soil Science Society of America Journal, 2018, 82(5): 1243-1251 Gautam A, Sekaran U, Guzman J, et al. Responses of soil microbial community structure and enzymatic activities to long-term application of mineral fertilizer and beef manure[J]. Environmental and Sustainability Indicators, 2020, 8: 100073 林曼霞, 邹勇, 孙永学. 室内粪土模型中土霉素对主要反硝化基因转录水平和菌群结构特征的影响[J]. 生态毒理学报, 2018, 13(5): 182-189 Lin M X, Zou Y, Sun Y X. Effects of oxytetracycline on the transcriptional characteristics of dominant denitrification genes and flora structure characteristics in indoor manure-soil model[J]. Asian Journal of Ecotoxicology, 2018, 13(5): 182-189(in Chinese)
隋倩雯, 张俊亚, 魏源送, 等. 畜禽养殖过程抗生素使用与耐药病原菌及其抗性基因赋存的研究进展[J]. 生态毒理学报, 2015, 10(5): 20-34 Sui Q W, Zhang J Y, Wei Y S, et al. Veterinary antibiotics use, occurrence of antibiotic resistance pathogen and its antibiotic resistance genes in animal production: An overview[J]. Asian Journal of Ecotoxicology, 2015, 10(5): 20-34(in Chinese)
Shawver S, Wepking C, Ishii S, et al. Application of manure from cattle administered antibiotics has sustained multi-year impacts on soil resistome and microbial community structure[J]. Soil Biology and Biochemistry, 2021, 157: 108252 安娜, 高纪超, 韩雅棋, 等. 施粪肥对人参栽培土壤理化性质和真菌群落结构的影响[J]. 吉林农业大学学报, 2019, 41(6): 695-706 An N, Gao J C, Han Y Q, et al. Effects of manure application on soil physicochemical properties and fungal community structure in ginseng-planted soil[J]. Journal of Jilin Agricultural University, 2019, 41(6): 695-706(in Chinese)
Pérez-Valera E, de Melo Rangel W, Elhottová D. Cattle manure application triggers short-term dominance of Acinetobacter in soil microbial communities[J]. Applied Soil Ecology, 2022, 176: 104466 Tulayakul P, Boonsoongnern A, Kasemsuwan S, et al. Comparative study of heavy metal and pathogenic bacterial contamination in sludge and manure in biogas and non-biogas swine farms[J]. Journal of Environmental Sciences (China), 2011, 23(6): 991-997 Hu Y A, Cheng H F, Tao S. Environmental and human health challenges of industrial livestock and poultry farming in China and their mitigation[J]. Environment International, 2017, 107: 111-130 Moynihan E L, Richards K G, Brennan F P, et al. Enteropathogen survival in soil from different land-uses is predominantly regulated by microbial community composition[J]. Applied Soil Ecology, 2015, 89: 76-84 理鹏, 吴建强, 沙晨燕, 等. 粪肥和有机肥施用对稻田土壤微生物群落多样性影响[J]. 环境科学, 2020, 41(9): 4262-4272 Li P, Wu J Q, Sha C Y, et al. Effects of manure and organic fertilizer application on soil microbial community diversity in paddy fields[J]. Environmental Science, 2020, 41(9): 4262-4272(in Chinese)
Li H Y, Zheng X Q, Tan L, et al. The vertical migration of antibiotic-resistant genes and pathogens in soil and vegetables after the application of different fertilizers[J]. Environmental Research, 2022, 203: 111884 Chen Q L, An X L, Li H, et al. Do manure-borne or indigenous soil microorganisms influence the spread of antibiotic resistance genes in manured soil?[J]. Soil Biology and Biochemistry, 2017, 114: 229-237 Pérez-Valera E, Kyselková M, Ahmed E, et al. Native soil microorganisms hinder the soil enrichment with antibiotic resistance genes following manure applications[J]. Scientific Reports, 2019, 9(1): 6760 Macedo G, van Veelen H P J, Hernandez-Leal L, et al. Targeted metagenomics reveals inferior resilience of farm soil resistome compared to soil microbiome after manure application[J]. The Science of the Total Environment, 2021, 770: 145399 Zhang H P, Zhang Q K, Song J J, et al. Tracking resistomes, virulence genes, and bacterial pathogens in long-term manure-amended greenhouse soils[J]. Journal of Hazardous Materials, 2020, 396: 122618 Mills M, Lee S, Evans M, et al. Enteric pathogens and carbapenem resistance genes are widespread in the fecal contaminated soils of cattle farms in the United States[J]. Environmental Advances, 2021, 6: 100137 Zhou R J, Zeng S Z, Hou D W, et al. Occurrence of human pathogenic bacteria carrying antibiotic resistance genes revealed by metagenomic approach: A case study from an aquatic environment[J]. Journal of Environmental Sciences (China), 2019, 80: 248-256 Yin Y, Zhu D, Yang G, et al. Diverse antibiotic resistance genes and potential pathogens inhabit in the phyllosphere of fresh vegetables[J]. The Science of the Total Environment, 2022, 815: 152851 邓雯文, 杨盛智, 何雪萍, 等. 牛粪发酵过程中抗生素耐药基因及相关菌群组成变化规律[J]. 生态毒理学报, 2019, 14(2): 153-163 Deng W W, Yang S Z, He X P, et al. Change of antibiotic resistance genes and bacterial communities during dairy manure composting process[J]. Asian Journal of Ecotoxicology, 2019, 14(2): 153-163(in Chinese)
Wang F H, Sun R B, Hu H W, et al. The overlap of soil and vegetable microbes drives the transfer of antibiotic resistance genes from manure-amended soil to vegetables[J]. The Science of the Total Environment, 2022, 828: 154463
计量
- 文章访问数: 1070
- HTML全文浏览数: 1070
- PDF下载数: 83
- 施引文献: 0